NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000081

Scaffold Ga0307512_10000081


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000081 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113613
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)95 (65.07%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004891Metagenome / Metatranscriptome419Y
F006048Metagenome382Y
F010438Metagenome303Y
F042672Metagenome157Y
F080709Metagenome / Metatranscriptome114Y
F086388Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_10000081106F004891GGAMQASGFGMGVGRFSRPLRGVGVLAMPDAGLDTTRRVESVCEVPLGAGVLYLLVSGVAVGVIIDRHCVADGLISATRELFSEDEGVEF
Ga0307512_10000081107F010438GGAGMWIRRPFMSASDLQTVSYATRRVAKALPEAPHWSILESYWNTAMQQNKIWSIAFKACAQEILKQVC
Ga0307512_10000081108F006048N/AMRTGDLETGMLKQRPTLDITCSNQYQAHAQVDNVRSHFIQSPGDNIAKLYDLHRFESDAESLEFIDSLLADYTYLFPLAEHVEGGVRSPNPTQRVSKAANQWPASTLLPGRSNPAVYLLQILSLGK
Ga0307512_1000008155F080709N/AMVELSTRKREIRGDERNHHDKLGLERISCASQLTIPDMAGTSPNSVGNNIDMRSSKPNQVSHTPDFS
Ga0307512_1000008186F086388N/AMETGDKTAERLEMAAVKEDNRTFAADDIDWCVSSIDCLCEWHVVNIYPVILNCCHRVVASQIGHQVEPYSLSSVEILSLTCYIKHR
Ga0307512_1000008192F042672N/AVVIPTKYKDPQGWANCVDGFIRVVKQTDKMHIVPVGVIVGPAHLVRENHAASDRIDSVWLVNNHVDLDTYWTVY
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