Scaffold Ga0307512_10000065

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000065
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120805
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (73.60%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006048	Metagenome	382	Y
F046111	Metagenome / Metatranscriptome	151	Y
F051592	Metagenome	143	Y
F060560	Metagenome	132	Y
F079403	Metagenome	115	Y
F079414	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_1000006511	F006048	N/A	MHRGDLERGMLKRRPTLVITRSIRYQVPAQVDKAKSHFIQSAKDHIAERYDLHRFESDAECLEFIDSFLADNKYLFRVAEHVEGCVHGPNPTKRVSKAAKEWPASTLLPGGSKAGVYLHQILSLGE
Ga0307512_1000006512	F060560	GGA	MIDDKDGHIPSPLIMFTCTALRHAYVEWQKNKGVHPKASKSKLKADRTDRSDYFNYKNDGGKIVSCCAATGHKLLTSPGIVDMYTFLMNTWNTLPESYQQRVYKKTLATVKRQIQPAENPTPAAVISTEAARVENAILLDYLTSEVALEEPEIGSNDPNIPIDNNCTDDEMHFGMPGGLRGLPR
Ga0307512_1000006514	F079403	AGG	MREYMRPQNRHDGKHPDAMIKYFRALLDNTEGATHRMAIYSGTRQFIKHKSCNKTYLSDEQLYSMEFCIYHGIKVQVEGLDGERISQMCRCTGSQRWCGGDRRNELVWSNQRPGRWYGAFNGRLPCQLQRLFKINLQNEDGALVEYWLALVLTPIPEHLGNLDPVSKLVHVRKAPAVVALKVFSGGHTVGCVHVIREIATSGRTGDGRNERWIVNRHIDLATWNDVCNESRENCILGAGRKNERREVRSVTHRIAIPMQANTH
Ga0307512_100000653	F051592	GAG	VCLHEVENTLLEVIKHADLHCMEEVGLWEFTHDTGNMSKHVGSSVNMAPREFGISCLRACIAESST
Ga0307512_1000006570	F079414	N/A	MCAWAYGTIYGWQPEMDLYQSSLPAVFAAIPVLYTIAESPLESLLQSLFECLLESRLESLLERASHREE
Ga0307512_1000006591	F046111	AGGA	MDVSSLEHVVIRAKLGEIIGFQIIQIAEQKASFQLTIIALAIEIVSTDRDLERYTSGLETCTVSIL