Scaffold Ga0307512_10000060

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000060
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122712
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (69.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008531	Metagenome	332	Y
F038018	Metagenome / Metatranscriptome	166	Y
F048690	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_10000060113	F004778	AGGA	MDNASSNYSMTRELQSPLEGSGIEWPALRNHIPRMAHVIQLALGAFLSSLGVKGHTKSWEAHERNQKFGEKESIDIGNSERLREEGHARIDKVSAMRPGLAKMIEKVRIS
Ga0307512_1000006030	F038018	GGAGG	VSQTQKHLSRHCSRCRDHQNEMGKAVGKATGWTAGRCRHVQISELFSIEECDQAVMDSLAATEVGKFPAKVE
Ga0307512_1000006088	F008531	N/A	MTCELQSTLEASGIEWPALSNHIPCMAHGIQLALGAFMSSLSVNGRTKSWEAHERDPQFGENESIDIGKVQRLRKEGNARIDKVSAMRPGLAKIIEKVRIS
Ga0307512_1000006091	F048690	GGAG	MLQDMDNMEASCVIYVKVSMFTHFEQSKISLVTVNKPGIVTLTVHHDTIVSVIFMQYPGDHLRQTSADFLSLEHHPRNI