Scaffold Ga0307512_10000044

Overview

Basic Information

• Taxon OID: 3300030522
• Scaffold ID: Ga0307512_10000044
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130137
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (36.80%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.6996
  • Long. (^o): -121.669

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004778	Metagenome	423	Y
F008531	Metagenome	332	Y
F026456	Metagenome	197	Y
F063295	Metagenome / Metatranscriptome	129	Y
F079403	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307512_10000044125	F079403	N/A	LAQRRENSAAACKVLPSGADLAAPLSPKSNAKPEFMGPQNRRDGKHPDTMIKDFRALLDNTQDATHRVAIFSGTRVFIKHKCRNKMYISDEQLHAMEHCISHGIKVQVECLDGERISQMCRCIGSQSWRGGDRRNDWVWVKQRLGRCYGALNGRLMWQLQXLFKIELQNEDGAFVEYWLALALTTIPENLGNLDPVSKFVLVRKAPAAFALQVFSVGNIVGCAHVIPEIATTSKTGDGRNEQWIVNSHIYLVTWNDVYN
Ga0307512_1000004458	F008531	N/A	MTWELQSTIEASRFELPPLRNHIPCMAHVIQLALGVFMSTLGAKGRIMPCEAHECDQLFGENKNTDIGKSQRLRTEGNDTINKLSAMRPGLAKIIYIVRISRNFKRP
Ga0307512_1000004459	F026456	GGA	MVALDHGMTVYNDMFHHMDDIMXALAKKKTQWKEDLYFTVKFARQKVSKYYAEVTPTRGMLLISAHLLYSFQKFPPFRQLDKGMDIHPEDKTSYTTQYQEEFLKYVEN
Ga0307512_100000446	F004778	N/A	MLDRFELTDGRLLGITTDDSSSNYSMTRELQSTLGASGIEWPALRNHIPCMAHIIQLTLGAFMSSLGVKDRTKSWEAHERDQQFGENESIDIGKSQRLRKEGNARINKVSAMRPGLAKIIEKVRIS
Ga0307512_1000004488	F063295	N/A	MQQLFKIKLLNEDGALVEYGLGQGLTTIPENLGNLDPVSNFVQVKKVPAALALQVXSVQNIVGCAHVIPEIATSRKTXDGWNERWIVYIHIDLATWNDVYN