NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307511_10355006

Scaffold Ga0307511_10355006


Overview

Basic Information
Taxon OID3300030521 Open in IMG/M
Scaffold IDGa0307511_10355006 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)627
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.5468Long. (o)-122.376Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014931Metagenome258Y
F038922Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0307511_103550061F038922N/AVGSTPCLLYTILCVVFEARVINLCDRDIATNFGAIAGEVILVDSCACTIIFICCDSKKKETEFLLAAVLFKTNFLVELGIGLLFPKVKRCSEQD
Ga0307511_103550062F014931GAGMPVTCSTNQSQVQLDLKIEKTLRRLRKEARLNTMVVA

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