Scaffold Ga0307511_10203922

Overview

Basic Information

• Taxon OID: 3300030521
• Scaffold ID: Ga0307511_10203922
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1021
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.5468
  • Long. (^o): -122.376

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001257	Metagenome	736	Y
F028689	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307511_102039221	F028689	N/A	MVNAHFKCRHISQFKGLIDVINYXKXKDKEKAKLRKEMLIQFKLEHYSVIESYLEL
Ga0307511_102039222	F001257	GGA	MARNLRNRPTTFIKSGRPKSTIFKFKAWPQKRSQNLSCNLAQTLLRILPIAGVLECKMMSSLVGGKIRQFPTTFMKTTYSNSDVSNDISSRQELEGYPPHPLEALLGILAISRAVVIQMLXNVVGGKRRLFPTTFMKNTLPFYDCINDISSSQNAGV