Scaffold Ga0307511_10001185

Overview

Basic Information

• Taxon OID: 3300030521
• Scaffold ID: Ga0307511_10001185
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27670
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.5468
  • Long. (^o): -122.376

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y
F020218	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307511_1000118512	F020218	AGGAG	MPISRKAILASAIAPCLVGALAGTPVQAGTSTIPDYFFKEWTVATNCTEQHAGLAARVAAGLKFKISADTQAADGSYVFQAEDVGQQHWAANWSGMKLQYREGTEMKTLPADFECIPGQEATSPFLAMSNYAQASEPYYEHRHWYGVAKIHGQMEHILIFPSNAATGPTAVILMQSVNSPGTVQLDDNGVIQMH
Ga0307511_100011858	F001784	GAGG	MGEVIHVAFGTEREWEQTHEKTVDGLVTIGSLFGDDEGLMRAKADCVYQILRQIVEEVPSVQITTKLPENLSPEQLDALTRVIKEAALKGIEIAMTHSVQVLMGSIYDLCTSKLHAYPQ