Scaffold Ga0307511_10000007

Overview

Basic Information

• Taxon OID: 3300030521
• Scaffold ID: Ga0307511_10000007
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 167546
• Total Scaffold Genes: 157
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (47.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.5468
  • Long. (^o): -122.376

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042138	Metagenome	158	Y
F047458	Metagenome / Metatranscriptome	149	Y
F080186	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307511_10000007125	F080186	GAG	MSVAEIVKEVPKLSLDEMKEVARALREAMEDADDLSDVLAVLENPGKPIPMSEIRKKYSL
Ga0307511_10000007151	F042138	N/A	LNNWQAKLISFAIALVIWAYVKNQVSPGFLDQLLTGTFTPGH
Ga0307511_1000000723	F047458	AGGA	MAKTSSHRLVFHRDRFLKLGDAVPSGLKDDAGKRLPFGGSCMVDSIYHNEVAGQFVVTISHYPPEVK