Scaffold Ga0302193_10256646

Overview

Basic Information

• Taxon OID: 3300030519
• Scaffold ID: Ga0302193_10256646
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 942
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000758	Metagenome / Metatranscriptome	903	Y
F010440	Metagenome	303	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302193_102566461	F010440	N/A	RNLASSEISPAQREKREAQMARCNRIIQRARQQAHRSLASFAGTLLDMIDDTVFDQNQNSAIITAAHLIRSASIEQLAVAVPAAIRETPTCDTRLKRVKCPEFTETVVCLLSLDKITFSCERNIAIRTALHLSNIVGRHQIYRSVRRAKADTGELGPKCMANHPKNSGSSPRGSGSKKIAAIRAPSTA
Ga0302193_102566463	F000758	N/A	MLYNTSQKGGDMTTPKKTAIRPKRRIVAPLEKRTQLRLTIDSRFTKAHFNQLFAALGIRKKNALAEHIIMNFKTKVA