NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1031603

Scaffold Ga0272420_1031603


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1031603 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3082
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037509Metagenome167Y
F038484Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10316033F038484N/AMCIMRMLSAFXRSSRIFIIFLLRCDLCAEIALTFATRSLYFSHRXFHXYLXYCAIAMLSLVEIMKKRECHLHLDCIFTSSXMKTFKSIIFLMTSKQEMTRLTFVKRACISLHACLISCVRSLTXLCNVILFCSMFKXTCSELVYVSVSRVSMFTLLNTSATXCRVXFXSVSSLHSLLNSSSFLSRXCQTDASNAISDLTTAEYTYLAFVKIASHVKISRXLSVSILVTXFVFICXRCALHCSFMFSCIFRTRTSDFDLITEFSICMLVIMSNLFDFLVKCVSSYFSDANIASXVQAHFAQTSCALLSVLQISSVNLS
Ga0272420_10316034F037509N/AMILIFILIQIHSTDNEMSIKKFVYLIIDNIERQNNIKKSLESMRTYNRVIAREFIAQSVASVQID
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