NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1010446

Scaffold Ga0272420_1010446


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1010446 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6648
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021026Metagenome220Y
F055319Metagenome138Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_10104467F055319AGCAGMIEVRVKRLKLVDKMICIQISERDLAQKLNFSCKQRDFFIYIDDVIVVNIHDTQSEELLI
Ga0272420_10104468F021026N/AMIEFYILRQAQFKVLALILIDSEVFAYVFMNKFFTQQHHLLLHQLIHSRRLQEFDDQVTLINDIIHVIEITMILNEHIEKLFFYVIELSQYLIIISLSXLYHHVIDVNFEHNILIFSFFFCLNHCCSFLVKIYDLNQQEENFSFKVNKVAFFQSRSQFIHKKQLSSXIIHKKQFSLQIIHKKQFSLQITHKKSFSTQFARKK
Ga0272420_10104469F086377N/AMIQRFXNQRQRISILDCDNVQISIVHAEAKFFFKFLDEENKNDRLKVIDSNEIFAQILIQITTKF
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