Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1007587 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1007587 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8116
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8116

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F048018	Metagenome	148	Y
F102181	Metagenome	101	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_10075871	F048018	N/A	MSXMIXRRSLSELSTYFLSQKYRRFLYSSYLTREILLXCCTSLRSTLIIXTANLSLISTYFHNVXVKVSAKSSLRFRMFXFSXDTTSSTLNSLISKFMRVKICKSAEIIKDKCNXTEFKAMICDXSFMTLMSKMLKTRFLIILRFKTXIFKIVXCXYXCXESNVFFSLKRSSEXCCHYELTHRS
Ga0272420_10075873	F104135	N/A	MNRDIDVTQQYLNASQRSNQTIXTFAAHLSTLKHQLSLYSDEHKXTHLFIKLRFELRVIITNVQSISITRNALIDLVTRLKTNLRKEHILSLKXLQDEDLHDXDKVNKKTHSKXKKSHQSIRLNSSSKTSSHASSCYSKNLFNITCYMCNXKNHYFIDYKDKKIKNRSKESDVNRVFIDLISHMNHFKISRKDKLLMNVSNHXEKNKKFSS
Ga0272420_10075876	F009580	N/A	MIEVKVKRLRLVDKMICIQISEHDLAQKLNFFREQRDFFIYIDDVTVINVHDTQSEELFIXAFFSNFAQMLQFAVVTQLSLIADFLDFRNDQSFILNDDNDKA
Ga0272420_10075877	F001951	N/A	MTKLKFIDALKDEREKDEDIVKITVTKMMIFELKKLLVNAEKFLTLMNEIMTKMKQD
Ga0272420_10075878	F102181	N/A	MKEIMIIIHVHALYQTLLSCIQLIFVSLIFKYIKKLLESKSDEDSNRICKKMNDEERLIIQDLCDDLNYYHERLRIQFYINXRIENDEXK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1007587

Overview

Ecosystem & Geography

Associated Families

Sequences