Scaffold Ga0272420_1003872

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1003872
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12465
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021896	Metagenome	216	Y
F087979	Metagenome	109	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_10038723	F087979	N/A	MKEKNESSTSIYMNXAESRLNSSFIDLRLQKFAHTTEMIETELLRLN
Ga0272420_10038725	F094624	N/A	MLKINAKLSTTYHSEIDDQIEKVNAVMKHYFQVFVNYMQNDXAKXLSEIEFVINNTSSSTTLTSLFLINSSQNSHLNFKSFESLLKNFTFQAQDKLINVKEFIKKMKKLTEHLHDEMLIAQIIYKFNVNLFHHSCFKYFVEDEVXLNIRNLSIICFAVKLDDHNVDFFKIKHIFKNNSLIIELNLSAFMKIHLIFHVILLNHIASDFLSSQRQKS
Ga0272420_10038729	F021896	N/A	MMKNNLESEDFLKSVEYNLTFLRSDKEYIFSDETSERDSYSTIVIDKSSIKVREI