NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1003450

Scaffold Ga0272420_1003450


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1003450 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13533
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021026Metagenome220Y
F021896Metagenome216Y
F086377Metagenome110Y
F094624Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100345017F001951N/AMTIMKLRFIDSSRNEREKNEDTVEITVIEMMIFELKELLVNAEMLLTLMNEAMMKIKQDXXCLSCXSSSSMLS
Ga0272420_10034502F021026N/AMNKFFTQQHYFLLHQLTHSCRLQEFDDQITLIDDITYVVEITMIFDEHIERLFFYVIELSQYFIIMSLSXLHHHVIDVNFEHIILILFFFFCFNHCCSFLIKIYDLNQQEENFSFEVNKVTFFQSCSQFTYKKQFSSRITHKK
Ga0272420_10034503F086377N/AMIQHFXDQRQRILILDCDNVQISIVHAEAKFFFKFLDEENRNNHMKVTDLNKIFAQIFIQIIMKF
Ga0272420_10034504F021896N/AMTKNNLESEDFLKNVECNLTFLKSDKKYIFSDEMSERDSYSTIVIDEFSIEVREI
Ga0272420_10034507F094624N/AMQNDXAKXLSKVKFIVNNTSLLIILTSFFLINLSQNSCLNFKFSESLLENLMFQAXNKLINVKEFIKKIKKLTEHLRNEMLIAQIIYEFNVNLSHYSCFKYFVEDEVXLNACNLSIIHFIIKLNDHNVDFFKIKRVFKNNSLIIELNLSTFMKIHSIFHVIFLNHITSDFLSSQR
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