Scaffold Ga0272420_1003222

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1003222
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14293
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F023763	Metagenome	208	Y
F038009	Metagenome	166	Y
F070710	Metagenome	122	Y
F074204	Metagenome	119	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100322210	F001951	N/A	MMKFKFIDSSRNEKERDEDTVETTVTKMMIFELQELLIIAKMLLTLMNEIMMKMKQDX
Ga0272420_100322211	F009580	N/A	MIEVRMKRLRLVDKMICIQISERNLAQKLNFSYEQRDFFIYTNDVIVINVHDTQSEKLLIXAFFNDFAXMLQLAVVAQLSLIADFLDFRNDQNLILNDDNDEV
Ga0272420_100322212	F074204	N/A	MIVFCILRQAQFKVLALALIDSKVSAYVFMNKFFMQQHHLFLHQLTHSHRLQEFDDQVTLINDITHVVEITMILDEHIKKLFFYVIELN
Ga0272420_100322214	F038009	N/A	MSSIIKASSFQLNYVKLYKKLIELICLKNNRSFKEKRILTLDFXXVFFLNDLKNTTRSFLFQMKDKIERSLFLVNELSISXLLMSEXEIILLLVNKXETELFFTSELRTELLLVSELKTELLFLNEXETRLLLASELKTELLLSSEXETKLLLASKLNAELLLMSDL
Ga0272420_100322217	F023763	N/A	VIRDHFDRIDKVFKLXSSFLESMNNDHEFFIVDLVVTLDXVMLLXKVSDXMKNLILIILRENVFEYIVQSIDFYHNLVIXIIMTKNNLESEDFLKSVECNLTFLRSDKEYIFSDETSERDNYFTIVIDESSIEVREI
Ga0272420_10032226	F070710	N/A	MTKQLFLQILQYNIRKSLKIQESFLIDREVCKFNIIVIQKQECNINDLQSFSSAHNFFHLMKNSSSQSRTCIYINKCLRFNQXTVKTAESDICSIRILTRNTDNKMQMLRLLNIYNLNSLFITFTEKLSTISCLNELLKNDCKQIVVKNFNLHHSHXERXRCFAQHMMIDILLNNITNVRLRLLLKSGTITHEAHNQFTMIDLVFSSEKIQSMTCKCYDPSYAPSLVAMLMAILRAIADRSPLGHRLVPKPTLFRVSLCSPESYR
Ga0272420_10032229	F089602	N/A	MKDEXLSFIKISSEKNDDLSEIIDITLQAVNQXEIFHQRMFFLLIKKIVIIDKVIHVLLQSFMKI