Scaffold Ga0272420_1002778

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1002778
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16177
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F036035	Metagenome	170	Y
F038008	Metagenome	166	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100277816	F087980	N/A	LINNERAVEQFTQSVIENLVKIFRVMQELQNQVQQYDVIISSSFIIFSSSIYIKLNSQSLVMITQIIAQILNNQSSLVIHLFANSVAVFIASRFKKLFDISEYERNKDRLNA
Ga0272420_100277818	F010214	GAG	MKVSVLFDYDASSLLCFSLTIFYTTMFXFDSXFEDKRHFLCIHDACDCNVHRAAFSYSMIVIHXAEKYVMKERCTXXEDKVXLYXIILFFFXFNLCHVNVEXIVSIDVXSQSFNVXLXLMKENAFXLFSXALDFSCE
Ga0272420_10027785	F038008	N/A	MKXSHLYMMTFXSKSLRVVIVANKKMSISQHHLNTFMLKQRVYLNDSNSKENVTMTAMRINXELNKRLRKLTLVITHHEELKELIAKVKHFANIATENRKYHEKIYKVYSDSQTSLKTVKVMISTKDQTRLQRVQIAYESI
Ga0272420_10027788	F036035	N/A	MKDRTKDDAMQREHHELEKASKNHERDDSDHSNNILNKHTESIYDCDVIKESDEREKK