Scaffold Ga0272420_1002669

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1002669
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16662
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F019260	Metagenome	230	Y
F035571	Metagenome	171	Y
F075493	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100266913	F010214	N/A	MKVSVLFDYDTSSLLCSLLMIFYTMMFXFNFXFKDERCFLCIYDAHDCNVCKAVFSYLMIVIHXAEKYVMKERCTXXEDKMXLYXVILFFSXFNLCHVDVEXIVSIDMQLQSFNVXLXSMKENAFXLFSXAFNFSHE
Ga0272420_10026692	F019260	N/A	MSQFENISNTLPSASLVSINELITVAQFRTHVNNAFEAXYTFLIKLQTXFNDIITQYINXVSVCQQEHEQTQVKLKQFQINNEILLEMIQELKSMSRIDIKSEKYSNSELYIEERENKLNQFIFELISKLKLNANRYSTSESRLLYEYSRLLRNAVAQALSRITAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNRIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYPFKYATFSTGSKATISSSRDLMNLSIVNMKKRDSLTLKKHQHRMINHLCLYCDKSEHQTAICNSKFKIQLRAVSLFVFAISIDNLAFDTSFVLEKA
Ga0272420_10026693	F075493	N/A	MQSVQAMHKYMLHHLITLFAVTLQAIHVXNIFKVQISIQIYAFNSDVHCENAFCLLKIIMHLYHLIAQMQSLCXDCVNICDAFFVLFSSLISLIFVILRYCDAIACXNHCEEENASSASQLYLRIFLNEDIQKYYFLNDE
Ga0272420_10026694	F035571	N/A	VYVSVFKVSMLTLLNISTTXCRVXFXSVSSLHSLLNSSSFLLRXCQTNASNAISDLTTAEYTCLAFVKIASHVKTSRXLSVSILVTXFIFICRRCTSHCSFMFSFTSRTCTSDFDLITKLSIYMLVIMLNLFDFLVKYVSSYFSDANVASXVQVHFAQTLCALLSVLQISSVNLL
Ga0272420_10026699	F010214	GAG	MRMSILFDYDASSLFCSSLTIFYTMIFXFNSRFKDERCFLYIRDAHDCNVHRAAFSYSMIIIHXAEKYVMKERCTXXEDKVXLYXITLFFFXFDLCHVDVEXIVSINVQSQSFNVXLXSMKENVFXLFSXTLNFSRE