Scaffold Ga0272420_1002369

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1002369
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18166
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F061401	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100236910	F061401	N/A	LNNDQRVIQEIKNKIKRVNNLSKTIFHKATVVTQSVDHLKSDQLKSCDTILNNVKEADILVESCFICHKLDHDSKECFDQSTKINAVNKKYDCFDFDSNFDSKN
Ga0272420_100236912	F008735	N/A	MREIMIIVHVHALYQTLLSCIQSIFVSLILKYVEKLLESRSDDNNDRVRREVNDEERLIIQDLCNDLSYHCKRLRIQFYINXRIKNDEXEQDDDIILSNLILKLLHYAKDLNXIFNYTLSELFNSTLIID
Ga0272420_100236913	F001951	N/A	MTMTKLKFIDSSRNERERDEDTVKITVTEMMIFELKELLVNAEMLLTLMNKMMTKMK
Ga0272420_100236914	F009580	GAG	MICIQISERDLAQRLNFSYEQQDFFIYIDDVTVVNVHDMQSEELLIXAFFSNFAXMLQLAIVAKLSLVADFLDLRNDQNLILNDDNDKT