Scaffold Ga0272420_1002265

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1002265
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18833
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F048018	Metagenome	148	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100226512	F048018	N/A	MTLSXVSXMIXRHSLSELSIYFLSXKYRXFSCFSHLTKEILLXCRASLQSTSIIXAANLSLILTYFYNVXVRMSAESSSRFRVFXFSXNLTFSTLNSSISKFMKARICKSAEITKNRCNXIESRMMICDXSFMTLMSKMSRVRFSTILKSKT
Ga0272420_100226514	F020121	GAG	MKRLIEHLRDEMLIAQIIYKFNVNLSCCSCFKYFIEDEVXLNVHNLNIAHLIIKLNDHNVDLFKIKRVFKNNSLIIELNLSAFMKIHSIFHVILLNHIASNSLSSQRQKFXKFIVIKNDERFXYVNSILNFKHDKCYNSSLLKYYIDXENHFFIXESFHLLNNCEQTLNEYHLVNSVVEESHVLSCVMSQSQCQEL
Ga0272420_100226519	F001951	N/A	MIIIKLKFIDSLRNKRERNEDIVETTVTEMMIFKLKELLVDAETFLTLMNKIMMKMK
Ga0272420_100226520	F094625	N/A	MIKNSVEIFHVMQKLQNQVQQYDVITSFSFIVFNSSIYIKLNSQSFMIIVQIITQILNNQSFLIIHLSVNFVTIIITSRFKKLLNIFKYKRNKDQLNAXKQSLIQCMNMNNDHYFFHXVKIIYVESXFIINKKIYNLMN
Ga0272420_10022655	F008735	N/A	MREIMIIVHIHALYQTLLSYIQLIFIFFIFKYVKKLLEFKSNENSDRVRREMNDEERLIVQDLCNDLRYYHKRLRIQFYINXRIENDEXEXNDDIMLLNLILKLMHYVKDLNXIFDHTLSKLFNSTLIVDQEIVKXLHLSKRIIKXDFNIXKYCRKCRSFIMSKTELN
Ga0272420_10022657	F009580	GAG	MIYIQIFERNLTQKLNFFYKQRDFFIYTDDITVINVHDMQSEKIFIXAFFSNFAXMLQLAVVAQLSLVADFLDLKNDQSLIXNNDNDEI
Ga0272420_10022658	F021026	N/A	MIVFCILRQAQFKVLTLALIDNEVFTYVFMNKFFTQQHHFLLHQLTYSCRLQEFNDQVALINDIIHVIEITMILDEHIEKLFFYIIELSQYLIIMNLSXLHHHVIDVNFKHNILILSFFFCFNHYCSFFIKIYDLNQQEENFSFKVNKVAFSQSHSQFTHKK