Scaffold Ga0272420_1002013

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1002013
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20520
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009377	Metagenome	318	Y
F009580	Metagenome	315	Y
F023763	Metagenome	208	Y
F061399	Metagenome	131	Y
F086375	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100201310	F023763	N/A	MMIQLLNXHEILKIFMIRDHLNRIDKVFKLXSSFLESMNNDHKFFIVDLIVTLDXVMLLQKVSDXMKNLILIILKENIFEHIVQSINFYHNLVIXIIMMKNNFKSENFLKNVECNLTFLKSDKEYIFSDKMSERSSYFTIIINESFIKVREI
Ga0272420_100201319	F086375	N/A	MFTLFVNSKSIASRNRGENWFNEINEHYKRQNNDHVIIFKXLHKLRQFNVLKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNASQ
Ga0272420_100201323	F009580	GAG	MICIQISECNLTQRLNFSYEQQDFFIYTDDITVVNVHDMQSKKLFIXAFFNNFTQMLQFAVVAQLSLIADFLDLRNDQSLILNDDNNKV
Ga0272420_10020135	F009377	N/A	MTRSTESESVSIACYKLQNARKESLLSQNXTASEEEDMNASLNTEEENMNTLLFDHKMIKISISTELNAXISAHEADDLVVFIKYICQQHDIEIEIHNDMIQMLNDVNKINIELKAINIKLKVTQIMLNAVXTCLQKEMKKKNVIIHYLEATSSQLSTSISKDXFLRLIKLSDSLLFEDSRQNVNNXLFQMQNKLKMNKNHFSIEEMKIAYVKSXVSETTIKHIAFRMKDMITNSFLEVKKILLIINKMYDDLNQHHTT
Ga0272420_10020139	F061399	N/A	MNYVNSLSLNIFMSIIYKYVLIFVDHFIKMKHLVLTTFMKVEEVINYFYAHVXKYHNLLKFFISDXDTQFIFNVXKHMCKMLKINVKLSMMYHFEIDDQIKRVNAVMKHYFQVFVNYMQNDXVKXLSKVEFVINNTSSLITLTSFFLINLSQNSCLNFESFESLFKNLMFQAXDKLINVKKFIKKMKKLTKHLRDEMLIAQIIYEFNVNLSCRSCFKYFIEDEVXLNACNLSIAHLAVKLDDYNVDFFKIKRVFENNFLIIKLDFSTFMKIHSVFHVTLLNYITSDFLLNQRQKSQELIVIKNDKRFXYVNS