Scaffold Ga0272420_1001989

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1001989
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20755
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (34.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F040408	Metagenome	161	Y
F048019	Metagenome	148	Y
F075494	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100198913	F048019	N/A	MNKHTFKLFIAEDFTKVLQDESTMYAFVMINIVEESIIEHQVKVMNNVMSYITNALEMQTLLVELKEYKDVFLTESANKLFLHEDHDHAIEITAKSSYELLYNLSN
Ga0272420_100198917	F075494	GAG	MFIHNVNEQRYSAKHVESRSQDEIYCTXVINEVKKMSVHNVNENTSMCSAVHVRSILLKIMILTVRETHLDEVYFLKDKIFQFKSTTSRSINVEMLTHRDHNVAEKQLNSVAKTVDCKQLVSHAIVKVLTIHETIYNFSSKFIIELIKILQ
Ga0272420_100198920	F040408	N/A	MYDYEFIFDIHIENDVTKEEMSAAKKCIEMLQNVQNTLMK
Ga0272420_10019897	F001951	N/A	MMIIMKLRFINSLKDKRERNEDTVETTVTEVMIFEFKKLLINA