Scaffold Ga0272420_1001893

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1001893
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21494
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028368	Metagenome	191	Y
F033266	Metagenome	177	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100189317	F028368	N/A	LCKLDEILSKENYFEKSFLINAHLISQNXSFSLCSLIDSDFVIYMIIHSNLINKVCKKLRIQSIFLTKEKLIRDYDKKIFKKIIIHKILLNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNNIIVFSNQLNTSISIFSILLNSKHSSXSRSSLFSSIIQTKIFMMLKQLVRKESFLIXSINAALFKTLLNHSKKDKIKVFALFMININREIMYNTQCNLNALDVSSINETTQNLKDIKAKLSLKYHKFLDVFDRAQLNKLLSHRFYDHKIELISDSTFSHCRVYQMFSVKLLKVKKYLNENLSKKFITSSQTLYFFFVLFALKANEDFRFCVNY
Ga0272420_10018932	F033266	N/A	MSSHSLTEERFEEFRNRFSQISDADSLKSRTKSSSAALFIYEDDESFAETMILFVFYEIXKTRSLALDEETDQLYELNK
Ga0272420_100189321	F094624	N/A	INLNQNLCLNFKSSESLFENLMSQAXNKLINVKKFIKKMKKLIEHLRDDMLIAQIIYEFNVNLFRRSCFKYFIEDEVXLNVHNLSIARLVVKLNDHNIDLFKIKRVFENNFLIIELNFSTFMKIHSIFHVILLNHIASDFLSNQCQKLXEFIVIENDERF