Scaffold Ga0272420_1001772

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1001772
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22427
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F038009	Metagenome	166	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100177224	F008115	N/A	MLXNVYRLHDLLSSIVSNRDFQFISTMXKSLCKXLRITVSLFTVYDSEIDDQSKQVNQDIERELRIYCNYMQNDXVKXISMMKFSDKFNIFLITSMILFYFNKEFHSRMSFDSDMIDYETTCERLEARKAYDIVIXMKELLNFDHQQLKKTKLIIEVQINKHRRNVIYEVNDXVXLSFRNVKTTRFCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLRLYSEDFLSEQHSKSLRSITIENDEHXEINDILNFRCYQDXIQYKVKXTDLNRNDEXYYVDKEKFNDSEKVLNEFHKLYSNKSR
Ga0272420_10017726	F038009	GAG	MIKALNSQINYVKLYKRLIELICSRNNRSFKEKRILTLDFXXVFFLNNLKNITRSFLFQMKDKIEHDLFLMKKLSINXLLVSKRRVILLLVSRRETELLLASELRTELLLVSELKTELLLSSEXETKLLLMSELNAELLLVSNL
Ga0272420_10017729	F083460	N/A	MRLRIKSSDSQAYFNELFELNASSIEYATRDXLHELSNHRLNHEESQDNSENDDENETAEAV