Scaffold Ga0272420_1001703

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1001703
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23155
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F039410	Metagenome	163	Y
F042102	Metagenome	158	Y
F074203	Metagenome	119	Y
F086377	Metagenome	110	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100170311	F086377	N/A	MIQRFXNQRQRISILDCDNVQISIVHAEAKFFFEFLDEENRDDRLRVTDLNEIFAQIFIQITTKF
Ga0272420_100170316	F042102	N/A	MIRSSESVSIARYDFQNVRRESLLSQNQTASEEEDTNALLNREEKNMNTLLFDHKMIKISINTELNAXISTHEADDIVVFIKYMYQQHDIEIKIHNDMIQMLEDVNKINIMLKITQTRLQKKNKNKNVIIHYLKAASSRQSTLISEDXFSKLIKLSNSSLFEDSSQNVDNXLSXMQNKLKTNKNHFSIKELKIAYIKSXVSEAAIKHIASCMQNIFLNSFLEVEEVLSTINKMYNNLNHHHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLNDLQHKISSNLQRATLNEXITNLNEFVDICMQVNVRLTELNAXSIIKASATQAARSVISTSTTRLTSSVSLXKKLRRSKLNSI
Ga0272420_100170323	F039410	N/A	MFVMNKAKTSILFLFEQFNSVLNEAASMLRIENDSFXTSRLSIIEILVXVIEEDEVDRDQLECFELRKIEKIEIEVFNXSEKTMTSFCIFNNISFLFIQNLLNMTSXXLISTISIDTVNFLXLSMMRLNRILXVMIFLNIFSL
Ga0272420_100170325	F074203	N/A	MFNHLFTEECFEEFXNHFSLISDADLSKSXTKSSSAASFIHEDDKSFAEMIILFVFYKIXKTRSLALDEETDXLYELNKQQEDEIKELKTKLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXENXYEKIQNKLEINVDLFSNEXVKLSYIHSRLFDDAAEIIQAKREHNCVNFYRIVDDLLKELAQLFNDSNKKVNFHRKYYNLIQEFKKFCEFYIQFQRLSFYLDYHEK
Ga0272420_10017037	F094625	N/A	MKSLHNFSIDDECAVEQFAQSVIENSVEIFRAIRELQNQVQQHDVIISFSFIVLSSSVYIELNSQSLVMIAQIIAQILNNQSLFIIHLFANFVAVIIASRFEKLLDISEYERDKDRLNAXKQSLIQRMNVNDDRYFFHRVKIVYVESRLIIDKKIHNLMSQYGVNDLCIIFIFAD
Ga0272420_10017039	F009580	AGCAG	MIEVKMRRLRLVDKMICIQISERDLAQKLDFSRRQRDFFIYTDDVTVVDVHDTQSEELLIXAFFSNFAXMLQLAVVAQLSLVADFLDLRNDQSLILNDDNDEV