Scaffold Ga0272420_1001314

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1001314
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28547
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F035571	Metagenome	171	Y
F061399	Metagenome	131	Y
F086376	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100131413	F086376	AGAAG	VSIARYELQNARRESLLSQNXTASEEEDMNVSLNTEEKNTNALLFDHKIIKISINTELNAXINTHEANDIVVFIKYICQQHDIKIEIHNDMIQMLEDVNKINITLKITQMRLQKENKDKNVIIHYLETASSRQSTLISEDHFSKSIKLLNSSLFEDSTQNVNNXLSXMQNKLKTNKNHFSIEELKIAYIES
Ga0272420_100131419	F035571	N/A	MILFCSMFKXTCSELMYISVFKVSMFTLLNASATXCKVXFXSVSNLHSLFNNLSFLSCXCQTDALNAISDLTTVEYTCFTFVKIAFHVKTSRXLSISILVTXFVFICXKCMFHYSFMFSYISRTCTSDFNLITEFSIYMLVIMLNLFDFLMKCVSLYFSDANVVSXMQAHFAQMLYALLSVLQISSMNLS
Ga0272420_10013142	F061399	N/A	MNITYKYILIFVDHFIKMRHLILITSMKVEEVINCFYAHVXKHHNLLKFFISDXDTQFIFNVXKHMCKMLKINVKLLMIYYFEIDNQIERINAVMKHYFQVFINYMQNDXVKXLSEVEFIINNASSLITLTSFFLINLSQNSRLNFEFSESLLENLTFQAQNKLINVEEFIKKMKKLTEHLHDEMFIVQIIYKFYVNFFCCSCFKYFIENEVXLNVCNLSIAHLIIKLNDHNFDFFKIKHVFKNNSLIIELNFLTFMKIFSIFHVILLNHIASDFLSSQRQKSXKLIVIKNDKRFXYVNSILNFKYDRCYNSSLLKYYIDXKNHFFTXKFFHLLNNCE
Ga0272420_10013145	F061399	N/A	MSITYKYVLVFINHFIKMRHLVLITSMKVEEVINCFYAYVXKHHDLLKFFVSDHDIQFIFNIXKHMCKMLKIDVKLSTMYHSEINDQIKKINAVMKHYFQVFINYMQNDXVKXFSEVKFVINNASSLITLTSFFLINLSQNSHLDFKFSEFLLKNLTSQAXNKLINVKEFIRKMKKLTEHLQNEMLITQIIYKFNVNLFHHSYFKYFIEDEVXLNACNFSIIRFIIKLNDHNVDFFKIKHVFKNNLLIIELNLSTFMKIHSIFHVTFLNHITSDFLLNQHQKF
Ga0272420_10013148	F009580	AGCAG	MIEVRMKRLRLVDKMICIQIFERDLAQKLDFSRRQRDFFIYTDDVTVVDVHDTQSEELLIXAFFSDFVRMLQLAVVAQLSLVADFLDFRNDQSLILNDDNEKA