Scaffold Ga0272420_1001296

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1001296
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28848
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F044226	Metagenome	154	Y
F059497	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100129636	F044226	GAG	MIEFNENFNIFLIISMTSFYFNKNFHSRMSFDSDMTDYETIHKRLKARKANDIVI
Ga0272420_100129640	F059497	GAG	MFIEDINREIIYNTQCELDVINIFSVNETTQNLEDIKVKLSLKYQDFLDVFDQAQADKLSFHHSYDHKIELTSDVMSSRC
Ga0272420_100129644	F001253	GAGG	VTFIKGAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKPIREFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLNQHQMILEKT