Scaffold Ga0272420

Basic Information
Taxon OID	3300030517 Open in IMG/M
Scaffold ID	Ga0272420_1001253 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030517 Open in IMG/M

Scaffold ID

Ga0272420_1001253 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29647
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29647

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-76.9	Long. (^o)	160.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-76.9

Long. (^o)

160.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009377	Metagenome	318	Y
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100125313	F009377	N/A	MTRSTELESVSITRYELQNARRESLLSQNRTASEEKDTNVSLNTEEENMNALLFDHEMIKISISTELNAXISTHEADDFVVFIKYICQQHDIEIEIHNDMIQMLNDVNKINIELKVINIKLKATQTMLNVVXMRLQKKMKKKNVIIHHLEVTSSQLSTLISKDQFSRSIKLSDSSLFKDSKQNVNN
Ga0272420_100125315	F001951	GAG	MTMTKLKFIDSSRNEKERDEDIVETTVTKMIIFELKKLLVNAKMLLTLMNETMIKMK
Ga0272420_100125316	F009580	AGTAG	MICIQIFEHDLTQKLNFSYEQQDFFIYIDDVIVVNVHDMQSEELLIXAFFNNFAXMLQFAVVTQLLLVANFLDFKNDQSLILNDDNDKA
Ga0272420_100125317	F021026	N/A	MIVFCILHQAQSKVLTLTLIDSEVFAYVFMNKFFTQQYHLFLHQLIHSHRLXEFNDQVALIDDITYVIEITMILDEYIEKLFFYVIELNQYFIIMSLSXLHHYVIDVNFEHNILILFFFFCLNHYCSFLIKIYDLNQQEENFSFEVNKVTFSQSHF
Ga0272420_100125325	F020121	GAG	MKKLTEHLHDEILIAQIIYKFNVNLFCHSCSKYFIEDEVXLNACNLSIAHLTIKLNDHNVDLFKIKRVFKNNSLIIKLNLSTFMKIHLIFHVILLSYITSDFLLNQRQKSQELVIIKNDKRFXYVNSILNFKRDKHYNSSLLKYYIDXENHFSTXKSFHLLNNCEQMLNEYHLVNSVVEESHVLSCVMFQCQCQKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272420_1001253

Overview

Ecosystem & Geography

Associated Families

Sequences