Scaffold Ga0272420_1001146

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1001146
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31525
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.69%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F023763	Metagenome	208	Y
F038009	Metagenome	166	Y
F080690	Metagenome	114	Y
F086376	Metagenome	110	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100114611	F023763	N/A	VIVEFRQKLTSTSLMMTQLFNXHEILKIFMIRDHLNRIDKVFKLXSSFLESANNDHEFFIIDFIVTLDXVMLLXKVNDXTKNLVLIILRKNVFKHIVXSIDFYHNLVIXIIMTKNNLESEDFFKNVECNLTFLKSDKEYIFSDETSERDSYSTIVINESFIEVCEI
Ga0272420_100114613	F038009	N/A	MSSMIKALNFQLNYVKLYKRLIELICLRNNRSSKEERISTLDFXXVFFLNDLKNTIKSFLFQMRNKIEXSLFLVNELSISXLFVSKQRVILLLSSKXETRLLLANKLKTELLLFNEXETRLLLISKLSTELLFMNNL
Ga0272420_100114614	F001951	N/A	MIMMKFKFINSLRNKKERDEDTVEITVTEMMIFEFKELLVDAKMFLTLMNEMMMKMK
Ga0272420_100114615	F080690	N/A	MIENSVEIFHVMQELQNQVQQHNVIISSLFIIFSSSVYIELNSQSFTTIAQIIQQILNNQSFLVVHLSANFVAVFIASKFKKLLDISKYERNKDXLNAXKQSLIQCINMNDDHYFFHQVKIIYVESRLIIDKKTHNLMNQYQVNDLYIIFIFADXQHKLHYCCNNFFKTEDVHLYFYETLKQDMNNFVDYYNFFYQKKECSLMKDFSLIDCLKHNVNYFIQVIIFFXQNLNEIQSFIFY
Ga0272420_100114618	F086376	N/A	LKSEISTVTSEFLDQQFSTHIMIRSSESASIAHYKLQNARKESVLSQNXTASESEEEDINASLNTEEKNMNMLLFDHEMIKISISIKLNAXINTYEADNIIVFIKYICQQHNIKIKIYNDMIQMLKDVNKINITLKTKQTRLQKEMKDKNVIIPHLKTALSQQSTLISESQFLKLIQLSNSSLFEDSLQNVNN
Ga0272420_100114625	F104135	N/A	MIXMFAAHLSTLKHQLSLYSDEHKXTHLFIKLRSELRVIITNVQSISITXDALINLVAQLKTNLRKEHVLSLKXFQDEDLHDXDKVNKKTHSKRKKSHQLTKLNSSSKMSSHALSCYSKNLFNIMCYMCNXKSYYFIDCKDEKIKNKSKELDVNXVFIDSMSHMSCFKILKKDKLLMNASNYQEKNKKFSL