NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272420_1000970

Scaffold Ga0272420_1000970


Overview

Basic Information
Taxon OID3300030517 Open in IMG/M
Scaffold IDGa0272420_1000970 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35592
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (23.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-76.9Long. (o)160.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021216Metagenome219Y
F021896Metagenome216Y
F050043Metagenome145Y
F075494Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272420_100097015F021216N/AMKSRMKSNAMRREHHELEKAFRNHERSDDDHSNDTLNEHTESILSCDVIKESDERKKK
Ga0272420_100097026F050043N/AMIKIXSXLKKNEVEENEKLKETERAINKSTIIIHFCLCFIVSTTSFTXKINNVYVLFTHHHCCHLHQLHIIYTIYNVIYTHYNRRRIIIQSKVSLFLIFLQRFEEFYQELLEXINECTSLFIKVNKDINYXDREXIHLEEKTIVMMNXLIKIKLETKVKDXVKDQIXVSSETLXLCQDII
Ga0272420_100097029F075494N/AVINDVEKTFVHNVSERRYSTKHVKSRSQDEIYCTQVINEVKKISIHNVNENTSMCSAMHVRSMLLKVMTLTVQKTHLDEVHFLRDKIFQFKSTTSRSKNIEMLTYRNCNVVEKQLNFVIETVDCKQLISRAIVRVLTIHEMTYNFSSKFIVELIKILQQEDEFAVRLKADKTTSI
Ga0272420_100097036F021896N/AMMKNNLESEDFLKNVECNLTFLKSDKEYIFSDETSERDSYSTIVIDESFIKVREI
Ga0272420_10009705F001951N/AMIMIKLRFIDSSRNERERDENTVKTTVIKMIIFELKELLVDAKMLLTLMNETMMKTKQD
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