Scaffold Ga0272420_1000791

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000791
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41301
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021216	Metagenome	219	Y
F038008	Metagenome	166	Y
F040408	Metagenome	161	Y
F057012	Metagenome	136	Y
F064254	Metagenome	128	Y
F065269	Metagenome	127	Y
F098340	Metagenome	103	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100079110	F057012	N/A	MLDDSFDFKSFIVNIILSSLEKIFRSLALIDIKVTDMTFINDSLISELYECFDIQSISLFKSKSIHSYDEIFDXRFITHALYISVIIQEYKNEMMSLLITRLDQHKIIINNLXLKRNQILIDSTNNRLISSSNIQILKLIVXKTSSQSAFHXLESSEICEMKRKNLKFMSMIILRRTTNLKSVNRFIKSAFIRKQST
Ga0272420_100079112	F065269	N/A	MTRSTESESVSITHYELQNARIESLLLQNRTASEEEDTNVSLNTEEENMNVLLFNHKMIKISISTELNA
Ga0272420_100079118	F040408	N/A	MYNYELIFNIYIKNDAMKEEMSAAKEHVEMLQDMQNTLM
Ga0272420_100079122	F104135	N/A	MFAAHLSTLKHQLSLYNDEHKXTHLFIKLRFELHVIITNVQLISIIXNALINLVTXLKTNLRKEHILLLKXSXDENLHNQDKINKKTYLKRKKSHXLTKLDSSSKTSSHASSYYSKNLFNITCYMCNXKNHYSIDCKDEKIKNRSKESDANRVFINLISYMSRFKISRKDKLSINASNHREKNKKFSL
Ga0272420_100079125	F021216	N/A	MKSRMKSNAIKREHHELKKVLRNHERSNDDHLNNTLNEHTELISSCDVIKESNERERK
Ga0272420_100079126	F038008	N/A	MKMKXSHLYMMIFXSKSLRVVIVVNKKMSISQHCFNTFTLKQRIYLNDSDSKKNVMMTAMKINXKLNKRLRKSTLVITHHEELKELIARMKHLADVMTKNXEYHEKIYKVYNDNQTSLKTIKVMISTKNQTRLQXVQIMHESIQS
Ga0272420_100079144	F064254	N/A	MQELYKSVSSLFSFSFSFIXFFNDITAXNXFNMLIESIIXMIIIAALMISKSFLKFVMFSSHCIAFHSTFHLRYVNKMCLINIQSLLHLHVIIVTSSTRFSCRNXLKSIFLMRSCINNALXDFAXLLCNHKYXCVISDVRYQKXVALNLFFQTILHVYLICFCMSISFVITSMHXCSVSNKDKSCASLIILFTTLFSSISAYFVTQCNFSMTSXN
Ga0272420_10007919	F098340	N/A	MIKVAAYQTLVKKKNVKIFTLIISEINKMLSLIKDSAKLNEMTFVMSLKKLKKKLSIVYRDFLNVFDREKTT