Scaffold Ga0272420_1000718

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000718
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43513
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (16.28%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009377	Metagenome	318	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F064254	Metagenome	128	Y
F080690	Metagenome	114	Y
F087979	Metagenome	109	Y
F096306	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100071810	F064254	N/A	MQELYESVSSLFSLSIIXLFDDITAXNXFSMLVDNIIQMIIIAALTISKSFLKFVMFFSHCIAFHSTFHLKHVNKMCLIDIQSLSHLHVVIVILNTRLSCRNXLKSIFLMHNCISNALXDFAXSLYRCRCXXVISDVKYQKXVALNLFLQTILHVCLICFCMTFVIGKEXQXQILALLVINISNIHLISCFRFASLLAETYS
Ga0272420_100071815	F009377	N/A	MTRSTESESVSISRYDFQNVRKESLLSQNQAASEEEDMNASLNTEEKNMNTLFFDHEMIKISINTELNAXISTHEADNIVVFIKYICQQHDIEIETHNDIIQMLEDVNEINITLKITQTRLQKEVKNKNVIIHHLKAASSQQSTSTSEDRFLKSIKLLNSFLFKDSTKNVNNXLSXMRNKLKTNKNHFSIEELKIAYIKSXVSEAAIKHIASXMQDIFLNSFLEVEEVLSMINKMYDDFNHYHMT
Ga0272420_100071826	F080690	N/A	MKSFHNLSIDDERVVEQFAQSVIENSVEIFRIMRELQNQVXQHDVIISFSFIILSSSIYIELNSQSLAMIAQIITQILNNQSSLVIHFSANSVVVFIASRFKKLLNIFEYERNKDXLNAXEQSLIQRINMNDDHYLFHRVKIIYVESXLIIDKKIHNLMSQYRVNDLCIIFIFADXXHKLRHYCNNSFKTEETHLYLRETLKQSMNNFVDYYNFFYQKKECFLMKDFSLIDCLKRNVNYFTQVIVFFX
Ga0272420_100071827	F021026	N/A	MIIFCILRQAQSKVLALALIDNEVSAYVFMNKFFTQQHHLFLHQLIHSHRLXEFDDQVALINDITYVVEITMILDEHIERLFFYVTELSQYFIIISLSXLHHHVIDVNFEHNILILSFFFCLNHYCSFFVKIYDLNQQEENFSFEVNKVAFSQSCSQFTHKKQLSSRIIHKKQFSLQIAHKKQFSTQFACKKQSSFSFA
Ga0272420_100071832	F020121	GAG	MKKLTEHLRDEILITQIIYEFNVNLFHRSCSKYFVEDEVXLNACNLSIARLAVKLDDHNVDFFKIKHVFKNNSLIIELNLSAFMKIHLIFHVILLSHITSDFLLSQHQKSXELIIIENDERFXYVNSILNFKRNRCYNSSLLKYYINXEDHFSIXKSFHLLNNCK
Ga0272420_100071833	F087979	N/A	VKEKNESSTSIYMNXAESRLSSNSIDLRLQKLMHMIEMIETELLRLN
Ga0272420_100071843	F096306	N/A	MFAMYDNHAVDSLIVDDDSNKERSCRDNSQLHASMILFNIVTLIAINVKIVFVESNDK