Scaffold Ga0272420_1000702

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000702
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44270
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (21.28%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F009580	Metagenome	315	Y
F023763	Metagenome	208	Y
F038009	Metagenome	166	Y
F038484	Metagenome	165	Y
F044227	Metagenome	154	Y
F048018	Metagenome	148	Y
F070710	Metagenome	122	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100070216	F002432	GAG	MMKFSDNSNIFSISSMISFYFNKRFHSRISFNLNTTDYETTCERLEARKVDDIVIXMKELLNFDRQQLKKTKLIIEVQINKHRXNVTYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQLYSKDLLSKQHSESLKSITIEDDEHXEIDDILNFRRYRDRIQYKVKXIDLDRNDEXYYVDKGKFDDLEEVLNEFHKLYSNKSR
Ga0272420_10007022	F009580	N/A	MIEVRMKRLKLVDKMICIQISERDLAQKLNFSYEQXDFFIYIDDIIVVNVHDIQSEEFLIXAFFSDFAQMLQFAIVTKLSLVANFLDFRNNQSFILNDDNDKV
Ga0272420_10007023	F038009	GAG	MIKASSSQLNYVKLYKRLIELICLKDNRSFRKKRILTLDFXXVFFLNDLKNTTRSFLFQTRDKIEQDSFLINELSINXLLMSEREVILLLVSRXKTELLLASKLRTELLLVSKLKTELLLSSEXKTKLLLASKLSAELLLVNNL
Ga0272420_100070230	F023763	GAG	MNFQNCLILILMLRIKCIFLFKKIFXTTCQNIQLIIDLVEMISIVIVESKQKLTSMSLTTTQLLNXHEILKIFMICDHLNKINKVFKLXSSFLESANNDHKFFIIDFVVTLDXIMLLQKVSDXMKNFILIVLKENVFKHIVQSIDFYHNLVIXIIMTKNILESEDFLKNVECNLTFLKLNKEYIFSDETSERSSYFTIVINESFIEVREI
Ga0272420_100070231	F048018	N/A	MSXMIXRRSLSELSTYFLSXKYRXFSCSSHLTKEILLXCCASLQSTSIIXTANLSLISIYFHNVXMKVSAKSSSRFRMFXFSXDLTSSTLNSSISKFIKAKICKSAEIIKNKCNXIESKVMICVXSFMILMSKMSRAKFLTILRFKTXIFKIV
Ga0272420_100070237	F070710	N/A	MIKQSFLQILQYNIRKSLRIQKSFLINREIREFDIVAIQKQDHNNNDSQSFSSAYNFFHLVKNSSSQSRTCIYINKYLRFNQXIVETAKSNICSIRILTRNADNKTQTLRLLNVYNSCSLFITFTKKSSIISRLNELLKNDCKQLIIKDFNLHHSH
Ga0272420_100070240	F038484	N/A	MRSILMCITKVLFAFXRSSRIFVVLLLRCNLCAEITLMFATHSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVHRLHLDCIFASSXMKIFRSIIFLMTSKREMTRLTLVKRAHISLHACLIFCIQSLTQLCSVILFCSMFKXTCNKRMYVSVFKVLMLTLLNASATXCRVXFXSVSSLHFLLNSSSFLSRXCQIDASNVISDLTTAEYTCLAFVKIASHVKISRXLSVSILVTXFISICRRCTSHHSFMFSCIFRIRTSDFDLITEFSIYMLVIMLNLFDFLVKCVSSYFSDANITSXVQTHFAQTSCALLSVLQISSVNLL
Ga0272420_100070242	F100079	N/A	MFKHRHSICKXYADEKTLLKEEKHKQISKEXLNYVVXLKV
Ga0272420_10007029	F044227	N/A	MRLRMKSSDDEACTYALLELIAPAIKNDTRCXLLELSNNHHHHEESQNSSEDDDENEALEAI