Scaffold Ga0272420_1000692

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000692
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44857
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (22.64%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F048685	Metagenome	147	Y
F061399	Metagenome	131	Y
F087979	Metagenome	109	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100069220	F087979	N/A	MKEKNESLTFIYMNQAKSRLNNSFIDLRLQKFMHMTEMIKTESLKLN
Ga0272420_100069221	F087979	N/A	MKEKNENSVSIYMNXAKLRLDSSSIDLRLQKFTHMIEMIKIELLKLN
Ga0272420_100069222	F087980	N/A	MKLSHNFLIDDERAVEQFAQSMIENSVKIFRIMQELQNQVQQHDVIISFSFIIFSSSIYIKLNFQFLATITQIITQILNNQSSFIVHLFANFVAVFIAFRFKKLLDIFEYEKNKD
Ga0272420_100069224	F009580	AGCAG	MIEVRVKRLRLVNKMICIQIFERNLAQKLNFSHEQQDFFIYINDIIVVNIHDMQSEKLFIXAFFNDFAQMLQFAVVAKLSLVEDFLDFRNDQSLILNDDNDKA
Ga0272420_100069225	F021026	N/A	MIVFCILRQAHFKVLVLILIDSEVFAYVFLNKFFAQQHHLFLHQLTHFHRLQEFDDQVALIDDITHVVEITMILDEHIKRLFFYVIELSQYLIIMSLSXLHHHIIDINFEHNILILSFFFCLNYCYSSFVKIYDLNQQEENFSFKVNKVAFFQSHSQFTHKKQLSL
Ga0272420_100069230	F048685	N/A	MYXSDKQNIKINALTRXADVVLRDSEDERVRYQXITILTLNRMKIADLEKNISESIYKQILETNEIDENCTLLREVIARDETQYEDIKLKNCXTQNKILYYDSQL
Ga0272420_100069237	F061399	N/A	MKVKETINYFYAHVXKHHDLLEFFMFNXDTQFIFDVXKHMCKMLKINIKLSTMYHFEINDQIKRVNAVMKHYLQVFVNYMQDDXAKXLSEVEFIVNNASLSITLASFFLINLSQNSCLDFKSFESLFENLMFQAXDKLINVKKFIKKIKKLTEHLHDEMLITQIIYEFNVNLFHHSCSKYFVEDEVXLNACNFSIAHLAVKLNDYNVDLFKIKCIFKNNSLIIELNLSIFMKIHLIFHVTFLNHIASDLLLNQRQKSQELIIIKNDERF
Ga0272420_10006928	F020121	N/A	MKKLTEHLHNKMLIAQIIYKFNVNLFHRSCFKYFIEDEVXLNACNLSIAHLVIKLDDCNVDLFKIKHVFKNNSLIIELNLSTFMKIHSIFHVILLNHIASDFLSSQRQKFQELIVIKNDKRFXYVNSILNFKHDRYYNSLLLKYYINXKDHFFTXKSFHLLNNCEQMLDEYHLVNSVIEESYVLSCVISQYQCQEL