Scaffold Ga0272420_1000594

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000594
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50028
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F086377	Metagenome	110	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_10005943	F096307	AGAAG	MLYIVVTQIDASLKENVLKHKKDVDSKDVCDTKKCVCHRYLLTIRNTKKCVYLKDNRSXLEDAREEKRC
Ga0272420_100059448	F001951	N/A	MMKFRFIDSSRNEKERDEDIVKTTVTKMMIFELKELLVNAETFLTLMNEMMMKMK
Ga0272420_100059451	F086377	N/A	MIQRFXDQRQRISILDCNSIQISIVHAKVKFFFKFLDEENKDDYLKVIDLNEIFAQIFIQITTKF
Ga0272420_10005948	F096307	AGAAG	MLYIVVIQIDASLKENVLKHKKDVDLKDVCDTKKCVYHRHLLTICNTKKCVYLEDNRSXLENAREEKRCXVISESNLSQI