Scaffold Ga0272420_1000486

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000486
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58165
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (29.73%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F021026	Metagenome	220	Y
F023763	Metagenome	208	Y
F040408	Metagenome	161	Y
F048018	Metagenome	148	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100048640	F008735	N/A	MKEVIIIIHIHALYQTLLSCIQLIFVSLIFKYVKKLFESRSNEDSDRVCKKVNNERRLIVQNLYDNLNYHCKRLRIQFYINXRIENDEXRXDDNIMLSNLILKLMHYAKYLNXIFNHTLSELFNSTLIINQEIVKQLYLSERVPKQDFNVXKRCRKCRSFIMSKIELN
Ga0272420_100048641	F089602	N/A	MKDEXSSFIKISSEEDDDLSEIIDIALQIVNQXEIFHQRTFFLLIEKIVVVDKVICILLQNFAKI
Ga0272420_100048642	F001951	N/A	MTKLRFIDSSKDEREKDEDIVETTVTKMMIFELKELLVNAEMLLTLMNEIMMKTKRD
Ga0272420_100048643	F009580	GAG	MIYIQIFEHDLAQKLNFSYEQQDFFIYINDIIVVNVHDMQSEELLIXAFFNDFAXMLQLAVVAQLSLVADFLDLRNDQNLILNDDNDKA
Ga0272420_100048644	F021026	N/A	MIVFCILRQAQSRVLILTLIDSEVSAYIFMNKFFTQQHNFFLHQLTHSCKLQEFDDQVALINDIIYVIEITMILDEHIKRLFFYIIELSQYFIIMSLSXLHHHVIDVNFEHNILILSFFFYLNHYYSSLIKIYDLNQQEENFSFKVNKVTFFQSCSQFTHKKQLSSQITHKK
Ga0272420_100048651	F040408	N/A	MYDYESIFDICIENDAMKEEVSAAKERVEMLQDMQNTLMQXX
Ga0272420_100048658	F023763	N/A	MSLMMTQLLNXHEILKIFVICDHFNKINKIFKLXLSFLESANNDHEFFIVDLIVTLDXVMLLQKVSDXMKNLILIILKKNVFEHIVQSIDFYHNFVIXIIVMKNNLENEDFFKSVECNLTFLRSDKKYIFSDEMSEQDSYSTIVINESSIKVRKI
Ga0272420_100048659	F048018	GAG	MIXRHSLSELSTYFLSXKYKXFSYSSHLIKEILLXCCASLQSALIIXAANLSLISIYFHNVXVKVSVKSSLRFRVFXSSXNLTSSTSNSLNSRFMKVKICKDAEIIENRCNXTEFRVMICDXSFMILMLRTSRARFSTILRSKTXIFKIIXCXYXCXELNVFFFLERSSERRVKAFNLLLILLRX
Ga0272420_100048666	F040408	N/A	MYDYESIFDICIENDAMKEEVSAAKEHVEMLQNVQNMLMQXX