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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000465 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 59311 |
| Total Scaffold Genes | 64 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (17.19%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Amphiesmenoptera → Lepidoptera → Glossata → Neolepidoptera → Heteroneura → Ditrysia → Obtectomera → Papilionoidea → Nymphalidae → Danainae → Danaini → Danaina → Danaus → Danaus → Danaus plexippus → Danaus plexippus plexippus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035571 | Metagenome | 171 | Y |
| F064254 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_10004656 | F035571 | GAG | MRXLILINXTRMSLHAHLVSCVLLSIQLRNVTLFCSMFKXTCSELVYISIFSISMFILLNAFATXCRVXFYKVSSLHFLSDNSFSLSRXCQTDASNAISDLITAEYTCLIFVKIVSHMKTFKRLSVSILVTXLTSICQRCASHCSFMFSXVFRTCTSDFDLITELFICMLVIMLNFLDFLMKCVSSYFSDANVVSXVQAHFTQMLCILLSVLQISSMNLS |
| Ga0272420_100046561 | F064254 | N/A | MQELYESVSSLFSFSFIXFFNDITAXNXFSMLVESIIXMIIVAALMIFKSFLKSVIFSSYCIAFHSTFHLRHVNKMCLINIQFLSYLHIIIATLSTHLSCKNXLKSIFLMRSCINNALXDFAXFLCSHRCXCIISDVRYQK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |