Scaffold Ga0272420_1000401

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000401
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63991
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (14.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008115	Metagenome	338	Y
F038008	Metagenome	166	Y
F066295	Metagenome	126	Y
F086375	Metagenome	110	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100040122	F086375	N/A	MFTLFVNLKFIASXNHDENXFNEIKEHYKQQNNDHVVIFKXLHKLRQFNVXKKVNEINKAVMKDNVKDEIEQERKNKDIHDNASQ
Ga0272420_100040133	F008115	N/A	MLXNVYRLHDLFSFIVLNREFQFISTMXQSLCKXLRITTSLSTVYHSEIDDQSEXVNQDVKRKLRIYCNYMQNDXAKXLSMMKFSENFNIFLIISMISFYFNKEFHSRMSFNSDTTDYKITHERLEARKANDIVIXMKEFLIFDRQQLKKMKQIIEAQINKHRRDIIYEVDDXVXLFSRNIKTTRSCKNLKDKQLKLYQITVKIKIFYHLRLLISMKQLHSMFSLKLLRFYFDDFLSEQHSESFKSFTIENDEHXKIDDILNFRXYXDXIQYKIKXMRLDRNNEXYYVNKEEFESSKEVLVEFHKLYSDKSH
Ga0272420_100040145	F002432	N/A	MKFSKNFNIFSITSIILFYFNKEFHLXMSFNSDTTDYEITCERLEARKANDIVIQIKELLNFDCQQLKKTKLIIEVQINKHKXNVIYEVNNXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHFHLSVSMKHLHSMFSLKLLQCYECVRID
Ga0272420_100040150	F038008	N/A	MKMKXNHLYMMIFXSESLRVVIVANKKMSINQHYLNTFTSKQRVYLNNNDSKENVTTTAMRINXKLDKRLRKLTLIITHHEELKELIARMKHLADVVTENRECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQRVQITHESIQF
Ga0272420_100040157	F086375	N/A	MFTLFINSKSIASXNYDENXFNEIKEHYKRQNNDHVIIFKXLHKFRQFNVXKEVNKIDKEVMKDNVKDEIKQERKNKDIHDNASQ
Ga0272420_100040163	F066295	N/A	MFYEIXKTXNLAFNEETDXLYELDKQQEDEIKELKIRLQAKEIISSDFIYSERSRSSKIPDSSLFTDKKNSTXKNXYEKIQNKLEINVNLFSNEXVKLNYIHSRLFDDAAEITQARRERDYVNLYKIVDDLLKELAQLFNDSNKKVNFRREYYNLI
Ga0272420_100040166	F094624	N/A	MKHYLQVFINYMQNDXAKXLSEVEFIINNTSSLITLTSFFLINSSQNLRLYFKFSESLLKNLTSQAQDKLINVKKFIKKMKKLTEHLCNEMFIAQIIYKFNVNLSRHSCFKYFVEDEVXLNVCNLSIICFTVKLNDCNVDLFKIKRVFKNNFLIIELNLSAFMKIHLIFHVILLNHITSDFLLNQCQKS