Scaffold Ga0272420_1000383

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000383
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66231
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (5.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038484	Metagenome	165	Y
F040408	Metagenome	161	Y
F061400	Metagenome	131	Y
F075493	Metagenome	118	Y
F075494	Metagenome	118	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100038326	F061400	N/A	MNLNSEKTIIEAXNIYHREEDEDNVIDKSDDSFKTDLQNVLCFINI
Ga0272420_100038331	F075493	N/A	MQSVQAVHEYMLHHLMTSFAVASQAIHVXNISKVQISIQIYAFNFDVHCKNVFYFLKIITYFYHLIAQMQSLCXDCVDVCNAFFVLFSSLISLIFVILCYCNTIICXNHCEEENVSSVSQLYLRIFLNEDIQKYYFLNDEXARNDAINSCQTSAY
Ga0272420_100038342	F104134	N/A	MSLLLSLQSDMIKFLXSVNTSAIFCRICSINFFCIFFISLLFIILIMTFHLLXSDDKSSLNRCSFVFISSLVTFAHDVIFVERCMLLCVCNCLLSSXIDIFSFCTFFAMNAFXFMXCFSSELSQRHXIIFNAISFHKXSLLFSFSNVDIFISKSIMLATFSLSLRKHFDSTSLFSCDESTSLVIIFESALLQFMQFIVVQSSFIFTLSCL
Ga0272420_100038349	F040408	N/A	MYDYKSIFDIYIKNDVMKEEMLTAKEHVEMLQDVQNMLMQXX
Ga0272420_100038356	F075494	N/A	VINKVEKTFIHSISERRYSAKHVESRSQDEIYCTXVINEVEKMFIHNVSENMSTCSAMHVRSMLLRIIILAVQEMHLNEVHFSRSRISQFKSTTSRSTDVEMSTHRDHNVAEKQFNSVTEIVDCKQLISRTIVRVLTIHETTYKFSSKFIVELIKILQQKDEFVVRLRADETTSIQKSDVEAXTLNS
Ga0272420_10003836	F038484	N/A	MRLILMCVARMLSAFXRSSRIFIILLLRCDLCAEIALMSATRSLYFSHRXFHXSLXYCAIAMLSLIEAVAERNNHLRLICILVPSRIELFRSTTFLMMSEREMTRLNFVKQARINSHACLISCVQSLTRLCSVILFCSMFKXTCSELVYVSVSKVSMLTLLNASATXRRVXFXSVSSLHSLFDNSSFLSRXCQTDASNAISDLTIAEYTCLAFVKIASHVKTSRXLSVSILMTXFVSICLRCASHRSFVFSCISRTHTSDFDLITEFSICMLVIISNLFDFLMKCVSSYFSDVNVASXVQAHFSQTSCALLSVLQISSVNLS