Scaffold Ga0272420_1000360

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000360
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67841
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (52.38%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F036036	Metagenome	170	Y
F048019	Metagenome	148	Y
F058565	Metagenome	134	Y
F070711	Metagenome	122	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100036011	F000597	N/A	MKNVLISSMMSMSDDSFASESLTTEYVLSSNEISYSLKLLINIEAADYLFIDEVIAQIVCNQLQIKSLTLIKAKSIREFDDHYAKKLITHIIYLNLTIQDHMIDIASILIT
Ga0272420_100036012	F036036	N/A	MLVSLIHHLFSYFDQSFMSEDQCLVYLFRYILDLINLQAFASAFILDDVRVEAHMRMKALVHEEENQEDD
Ga0272420_100036013	F013598	N/A	MNFIIDLFDSSEYNAILMIICRLSKKRHYISCIIDDEDITVEKTAEMLIQ
Ga0272420_100036014	F017941	N/A	MKIADLKKNINESIYKQMFETNEIDENCMLLCEAIARNKIQYEDIKLKNC
Ga0272420_100036019	F070711	N/A	MKDVLISSMMSMSNDSFTSESLIIECVLSSNEISYSLKSLINIEAADYSFIDEVIT
Ga0272420_100036025	F102179	N/A	VINEVEKISVHSVSKNMNTCSAMHVRSMLLRIMILAVQEMHLDEVHFLRSKISQLESTTLKSTDVETSIHRDRNVVEKQLNSVVETVDCKQFISHAIVRVLTIHETIYNFSNKFVVELIKILQQEDEFAVRLKADKMMSIQKSNVKA
Ga0272420_100036027	F048019	N/A	VNKHAFKLFFAQVFAKALQDESTMYAFIMINVVKKLIVEHQVKAMNNVMNCIINTLKTQTLFIELKEYKDIFLIESADKLSLHEDHNHAIEITAKSSYESLYNLLNTELATLKQYLNNVLVKE
Ga0272420_100036030	F058565	AGAAG	MMNCMNCSNADLKMIVNDIDSLQENKDAKLKHLHNDEENVVNIIDLLIKISTLEKKKSKDHS
Ga0272420_10003606	F013598	N/A	MNFIINLSDSSEYNAILMIICKLLKKRYYISCIIDDEDITVEKTAEMLIQ
Ga0272420_10003607	F017941	N/A	MKIADLKKNISELIYKQIFETNEIDENCTLLREAITKDETQYEDIKLKNC