Scaffold Ga0272420_1000336

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000336
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70848
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (40.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036035	Metagenome	170	Y
F037509	Metagenome	167	Y
F070712	Metagenome	122	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100033611	F070712	GAG	MNDIKEKKSMIKIRKQVIFADEVSRTFYRKIEVTTLVNYSKSHDAILTNVKNIDLQAEICFICHKSDHTSREYSDQSRVNVLKDDEFNRLNSDSDSDSKN
Ga0272420_100033613	F037509	N/A	MILIFILIQIYSTDNEMNIKKFVYLMINDIERQNNIKKSIESTKTYDHVIARESIAQLVASVQIDX
Ga0272420_100033622	F036035	N/A	MKDRMKDDAMQKEHHELEKASRNHERDDSNHLNNTLDKHTASISDCDVIKKLNEREEK
Ga0272420_100033639	F102179	N/A	VINEVEKMFVHSVSENTSTCSAMHVRSMLLKIMTLAVQEMHLDEVHFSRDKISQFESTTLRSTNVETLTYRDCNVAEKQLNSVAETVDCKQLISRAIVKVLTIHEMTYDFSSKFIVKLIKILQQEDEFAVKLRADETTSI