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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000327 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 71924 |
| Total Scaffold Genes | 88 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (57.95%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F003820 | Metagenome | 466 | Y |
| F021896 | Metagenome | 216 | Y |
| F055319 | Metagenome | 138 | Y |
| F087979 | Metagenome | 109 | Y |
| F087980 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100032712 | F055319 | AGCAG | MIEVRMKRLKLIDKIICIQISERDLAQKLDFFCKQRDFFIYTNDVTVIDVHDMQSEKLLI |
| Ga0272420_100032714 | F001951 | N/A | MIMMKLKFIDSSRNKKERDEDTVKTTVTKMIIFELKELLVDTKTLLTLMNETMMKMKQD |
| Ga0272420_100032715 | F087980 | N/A | MKSLHNFSIDDERAVEQFTQSMIENSVEIFHVMQELQNQVRQHDVIILFSFIVLSFSVYIELNSQFLVMIAQIIAQILNNQSLFVAHFSANSVAVFIASKFKKLLNISEYERNKDQLNA |
| Ga0272420_10003272 | F000597 | N/A | MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIEFLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDYMIDTAFMLITQLD |
| Ga0272420_10003273 | F003820 | N/A | MKLFSYLEYDNHILMNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVSDKCATSLSITTLIINYVKSTIFSISESARSSIICYICNIFDHLFKNCFQLNKIDTSASCAFTSRLHEIIISKNKENEKMSFENNEAKN |
| Ga0272420_10003274 | F087979 | N/A | MKEKNESSTFIYMNQAKSRLNNSFIDLRLQKFMHMTEMIKTKLLKLN |
| Ga0272420_10003277 | F021896 | N/A | MTKNNLESENFLKSVECNLTFLKSNKEYIFSDETSERDSYSTIVINESFIKVHEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |