Scaffold Ga0272420_1000273

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000273
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79381
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (23.66%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F021896	Metagenome	216	Y
F061399	Metagenome	131	Y
F061400	Metagenome	131	Y
F070712	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100027349	F061399	N/A	MNITYKYVLIFIDHFIKIRHLVLIISMKVEEVINYFYAYVXKHHDLLKFFMFDXDTQFIFDVXKHICKMLKIDVKLLTMYHSEINDQIKKVNAVMKHYLXVFINYMQNDXTKXLSEVKFIVNNASSLIILASFFLINLSQNSCLNFKFFEFLLENLMFQVXDKIINVEEFIKKMKKLTEHLRDEMLIAQIIYKFNVNLFHHSCFKYFVEDEVXLNACNLNIAHLTIKLNDHNIDLFKIKLVFKNNSLIIKLNFSIFMKVHSIFHVILLNHITSDFLSSQRQKSXELIIIKNDERFXYVNSILNFKRNRCYNLSLLKYYIDXKNHIFTXKSFNLLNNYK
Ga0272420_100027352	F021896	N/A	MMKNNLESQDFLKNVECNLTFLKSDKEYIFSDEISERDSYSTIVIDESFIEVREI
Ga0272420_100027357	F009580	N/A	MKRLRLVNKIIYIQISEHNLAQKLNFSCKQQDFFIYIDDVTVVDVHDTQSEELLIXAFFSNFAQMLQFAVVAQFSLVADFLDLRNDQSLILNDDNDEA
Ga0272420_100027358	F001951	N/A	MMKLKFIDSSRDERERNEDTVKTTVTEMMIFELKELLVDAEMFLTLMNKIMMKMK
Ga0272420_100027368	F070712	N/A	LNNEYQVMNDIKEKKFIIKIKKQVIFVKKXDSLNLYRKIKVIISVNSSKSCDVTLINIKETDMQTESCFIYHKSNYSFKECSDQTSKINVLKNDKFNQFTLNSESDSDSKN
Ga0272420_100027379	F061400	GAG	MTLESVEQIMLLKYYNHIMNLNSEKTIIEAXDIYRREEDEDNAIDEAADSFRADLQNVLHSIIV