Scaffold Ga0272420_1000244

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000244
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83293
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (26.09%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040408	Metagenome	161	Y
F048018	Metagenome	148	Y
F048019	Metagenome	148	Y
F080690	Metagenome	114	Y
F086377	Metagenome	110	Y
F087979	Metagenome	109	Y
F094624	Metagenome	105	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100024441	F087979	N/A	MKEKNENSTFIYMNQAESRLNSSFIDLRLQKFMHMTEMIETELLKLN
Ga0272420_100024442	F080690	N/A	MKSLHNFSINDKHAVKQFTQSVIENSVEIFHVMQELKNQVQQHDVIILFSFIIFSSLIYIKLNSQSFIMIIQIIAQILNNQSSFIIHLFANSVAVIITSRFKKLFDIIKYEKNKNQLNAXKQSLIQRMNMNDDYYFFHXVKIIYVESXFIINKKIHNLMSQYXINDLCIIFIFADXQVXQHKLHHYCDNFFKTEDAYLYLHETLKQDMNNFVDYYNLFYQKK
Ga0272420_100024447	F086377	N/A	MIQRFXDQRQRISILDCDSVQISIVHAEAKFFFKFLDEENRDNYLKVIDLNEIFAQIFIQIMTKF
Ga0272420_100024449	F048018	N/A	MTLSXVSXMIQRRSLFKLSTYFLSXKYRXFSCSLHLIREILLXCCASLQSASIIXAANLSLISTYFHNVXVKISTESFSRFKVSXFSXDLMFSILNSLISKFIKVKICKNAEIIEDKCNXTEFKVMICNXSFMTLMSKTSKVRFLIILKFKTXVFRIV
Ga0272420_100024462	F094624	N/A	MKHYLXIFINYMQNDXAKXLSEVKFIINNTSSLITLTSFFLINLNQNSCLNFKFSEFLLENLMFQAXNKLINVKKFIKKMKKLTEHLHDEMFIAQIIYEFNVNLFCRSCFKYFIEDEVXLNVCNLNITHFTVKLNDHNVNLFKIKRVFKNNLLIIKLNLSAFMKIHLIFYVILLSHIISDFLSNQHQKLQKLIIIKNDERF
Ga0272420_100024466	F104134	N/A	VILCRICSIDFFCISSISLLFIILIMTSHFLQSDDESSLKCCFLVAISSLVTFTHDVIFVKRRVFFCICNCLLSSXIDVFNFYTFFAMNAFXFAXCFSFKSSRRHQINFNAISFHEXSLLFSFSNIDIFINKSIMLAMFSSSSRERFDLASLFSCDESTSLAIIFKSALLQFMQFIVVQSSSRFTLSCL
Ga0272420_100024474	F048019	N/A	MNEHAFKLFIAEDFTKVLQDESTMYAFVMINIVEESIVEHQVKVMNNVMSYITNALEMQTLLVELKEYEDVFLTESANKLSLHKDHDHAIKITAKLSYELLYNLSN
Ga0272420_100024480	F040408	N/A	MYDYELIFDIHIENDAMKEEVSAAKECIEMLQNMQNTLMKXX