Scaffold Ga0272420_1000204

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000204
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90719
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (32.65%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021452	Metagenome	218	Y
F021896	Metagenome	216	Y
F055319	Metagenome	138	Y
F061402	Metagenome	131	Y
F074204	Metagenome	119	Y
F079402	Metagenome	115	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100020410	F021896	N/A	VTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMNERDSYSTIVIDESSIEVREI
Ga0272420_100020414	F074204	N/A	MIVFCILRQAQSRVFALALIDSEVSAYVFMNKFFAQQHHLLLHQLTHSRRLREFDDQVALIDDITHVVEITMILNEHIKRLFFYVTELSQYFIVMSLS
Ga0272420_100020415	F055319	AGCAG	MIEVRMKRLRLVDKMICIQISERDLAQRLDFFREQRDFFIYTDDVTVIDVHDTQSEELLI
Ga0272420_100020417	F001951	GAG	MTMKKLRFIDSSRNERERDEDTVKTTVTKVMIFELKELLVNAEMLLTLTNEMMTKTK
Ga0272420_100020418	F102181	N/A	MKEIMIVVHVHALYQILLSCIQSIFVSLILRYVKKLLESRSDEDSNRIRREMNDERRLIVQDLCDDLSYCRERLRIQFYID
Ga0272420_100020421	F079402	N/A	MNKNHFSIEEMKIAYVKSRVSETTIKHIAFRMRNTITNSFLEAEEILSIINKMYDDLNQHHTTQRQFLKLYQNKIFFHEF
Ga0272420_100020423	F021452	GAG	MLISCFINILNNSFDFKSFIVDVILSNLEKIFRFLALIDIEVTDMTFIDDSLISELCERFDIQSISLFKSKLIHSYDEIFDRRSITHALYISVTIQEHKNETMSLLITRLDQHKIIIDNL
Ga0272420_100020429	F061402	N/A	MTEFVDNNAISPSIEQSAFFLNKSFHSHMSFDLNSTEYEIIQARIQASKAENIFEHMK