Scaffold Ga0272420_1000175

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000175
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98089
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (47.83%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F019260	Metagenome	230	Y
F021896	Metagenome	216	Y
F036036	Metagenome	170	Y
F038010	Metagenome	166	N
F061401	Metagenome	131	Y
F081945	Metagenome	113	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100017510	F036036	N/A	MLVSLIHHLFSCFDQSFTSEDQCLVHLFRYILDLIDLQAFASAFILNDVRVEAYTRMKDLVHEEESQEND
Ga0272420_100017511	F013598	N/A	MNFIINLFDSSEYNAILMIICRLSKERHYISCIIDDEDVIVKKTAEMLIQ
Ga0272420_100017512	F017941	N/A	MKIADLEKNISESIYKQILETNEIDENCTLLREAIAKDETQYEDIKLKNC
Ga0272420_100017516	F000597	N/A	MKDVLISSTISMSNDSFASESLTIECILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDDYYAKKLIIHVIYSNLTVQDHMIDTASMLIT
Ga0272420_100017517	F003820	N/A	MKLFNYLEYNDCILMNNLQNKINNRLQNNLSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCIVIIKVTVVSDKRITSLSVTTSIIDYVKSTISSISESARSSIICYICKTLNHLFKNCSQLNKIDTSASHAFTLRLHEIIISKNKKNKKMSFENSEAKN
Ga0272420_100017520	F021896	N/A	MKNNLESEDFLKNVECNLTFLRSDKEYIFSDEMNERDSYSTIVINESSIKVRKI
Ga0272420_100017523	F001951	N/A	MMTMTKLKFINSSRNEKEKDEDTVEMTVTKVIIFEFKELLINAKMFLTLMNKTMMKMK
Ga0272420_100017524	F087980	N/A	MKSLHNLLINNERAVEQFAQSVIENSVEIFRIMQELQNQVQQHDVITSSSFIVFNSSVYIKLNSQSLAMIARIVAQILNNQSFFIVHFSANSVAVFIAFKFKKLSDIFEYERNKDQLNA
Ga0272420_100017525	F008668	N/A	MILFYFNKEFHSRMSFDSDTTDYETTRERLEARKADDIVIQMKVLLNFDRQQLKKTKLIIEVQINKHRRNIIYEVDD
Ga0272420_100017529	F006206	GAG	LCKLDKILSKENYFEKSFLIDAHLISQNQSFSLHSLINSDSVVYTIIHSNLVDKVCEKLKIQSISLTKEKLIRSYDEKISKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272420_100017530	F061401	N/A	LNNDQRVIREIKDKIKRVNDLSKTIFHRATVVTQSVDHLKSDQLKSRDAILTSVKEANILVESCFICHKSDHSSKECLDRFTRINTVKNEYDRFNFNSNFDLKN
Ga0272420_100017532	F081945	N/A	MSSHSLTEEHFKEFRNRFSQISDADSSKSRTKSSSAASFIHEDDKSFAETIIFLVFYEI
Ga0272420_100017534	F019260	N/A	MIQELKSMSRIDIKSEKYLNSELYIEERENKLNQFIFKLISKLKLNANRYSTLEFRLLYEYSRLSRNAVAQALPRMTAQHDKLVTIEQLVALLRQAFDDSDKQEIAQRFISALRMQNRIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYFVKYATLSAGSKATISSSKDFMNLSIINMKKRDSLIFEKHQHRMINHLCLYCDKSEHQTAICNSKFKIQLRVVSLFVLAISIDNLAFDTSFVLGKV
Ga0272420_100017535	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHSLLCFSLSEICILQKFDDQSVVFNSITHYALVKLRVSSEELEEIFFYVTQLSQFSVVLDLL
Ga0272420_10001758	F061401	N/A	LNNNQRVIREIKNKIKRVDNLSKTIFHKATIVTQSVDHSKSDQLKSRDVILTNVKEADILVESCFICHKSDHSSKECLDRFTRINVVNNEYDCFDFDSNFNSKN