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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300030517 Open in IMG/M |
| Scaffold ID | Ga0272420_1000165 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 100282 |
| Total Scaffold Genes | 104 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (50.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -76.9 | Long. (o) | 160.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021896 | Metagenome | 216 | Y |
| F038010 | Metagenome | 166 | N |
| F048019 | Metagenome | 148 | Y |
| F074204 | Metagenome | 119 | Y |
| F086377 | Metagenome | 110 | Y |
| F102179 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272420_100016514 | F102179 | N/A | MINEVEKMSVHNVSENISMCSAMHVRSMLLRIMTLTVRKTHLNKVHFLKDRISQFELTTSKSTDVETLIHRDCNVAEKQLNSVTETVDYKQLISHAIVRVLTIHEIIYNFSSKFIVELIKILQQEDEFAVELRADEMMSI |
| Ga0272420_100016516 | F048019 | N/A | VNEHAFELFFTQVFAKALQDESTVYAFVMINIVKKLIIEHQVKAMNNMTSCITNAFKTQTLLIELKEYKNVFLIKSVDKLLLHEDHDHAIEITAKSSYKSLYNLSNTELATLRQYLNDVLAKE |
| Ga0272420_100016519 | F021896 | N/A | MTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMNERDNYFTIVIDKSFIEVREI |
| Ga0272420_10001652 | F038010 | N/A | MNNDHLMLSDNLESNKINVNLSVLIDINVIDYAFINDSFAQRHFLLCFSLSEICILQKFDDQSVIFNLITHYALVKLQVSSEKLEETLFYVIQLSQFSVVLDLL |
| Ga0272420_100016521 | F086377 | GAG | LILDCDNVQILIVHAKAKFFFEFLDEKNRSNYLKVTDLNEIFAQILIQIMMKF |
| Ga0272420_100016524 | F074204 | N/A | MIVFCILHQAQSKVLILTLIDSEVFAYVFMNKFFVQQHHLLLHQLTHSHRLQEFDDQVLLINDITHIVEITMILNKHIKKLFFYITELSQYFIIMNLL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |