Scaffold Ga0272420_1000146

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000146
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106417
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (23.68%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023763	Metagenome	208	Y
F024448	Metagenome	205	Y
F042102	Metagenome	158	Y
F058565	Metagenome	134	Y
F074202	Metagenome	119	Y
F079402	Metagenome	115	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_1000146102	F023763	N/A	VIRDHLNRIDKVFKLXLSFLESANNDHEFFIVDLIVTLNLIMFFXKVSDXMKNLILIILRENVFKHIVQSIDFYHNLVIXIIMTKNNLESEDFLKSIECNLTFLKSDKEYIFSDEMSERSDYSTIVIDESSIEVREI
Ga0272420_1000146106	F024448	GAG	VTFIKDAMKNVLISSTMSMSNDSFASESLTIECILSSNEINYSLKSLIDIEAADYSFINEVIAQIVCDQLQIKFLTLIKAKSIREFNDHYAKKLITHVIYSNLTIQDHMMSIISILITQLDQHQMILEKTXINKIDLVINMQINSLRFLNFNSHLKLIILLSSNKTITKQKSLIFTYILKRSFTFVTS
Ga0272420_100014633	F074202	N/A	MKRVDCKMNCKMNCKTIYMSFLLMFFCILCSDNAFDLALLLNDDFFLKLVISKLRLRVETELNFKEKVILRCSFFTVKDDDLDSSFNLETAMNFIKFLXFTIFCNNXSSFFNLFLSVKYDVTXSKXADAENXAFKSEVVVDFAVLSNVDNVNSSKFKNLDCENVMKRSTSIESSFFSSDIVN
Ga0272420_100014635	F042102	N/A	MTRSSESASIARYELRNARRKSLLSQNRAASEEEDTNASSNTEEENTNALLFDHEMIKISISTELNAXISTHEANDIVVFIKYICQQHDIEIKIHNDMIQMLEDVNETNITLKITQTRLQKENRNKNVIIRHLEAASSQQDTSTSEDXSSKSIKLLNSSLFEDSTQNVNNXLFRIQNKLKTNKNHFSIEELKIAYIESRVSEAAIKHIASRMRDTSLNSFLEVKEVLSIKNKMYDDLNHYHTIQRQYLKLYQNKISFHEFXMKFQRLSAKLKYNNETLLDDFQHKISSDLQRVTINEQTMNLNEFVNICMQVNFQLTKLNAXLALKTSTTQVARFITDILTTITTAISASISAXKKLRISKIDYVRKKLFKKELCFKCKKSEHRAHDCLESAQMHEIAANLKNDLSSSK
Ga0272420_100014642	F058565	N/A	MNRSSADSKTIVSDVDSLQENRDARSKCSHNDEKNVANIINILIKISTLKKEKSKDHS
Ga0272420_100014651	F104136	N/A	MIFSIKLAQIFSESXSMNKLXIXMNLLTSACKSTFDXRNXMLDQLSRHQRLKSLALSLTSXXXSLLRSQLQSLHERNSEYXTLTLLERSCLKKNFASNARSQNIEHMTVLSQLRCMKLQRIXKMICLRQSSDXERHAHILLHQYARXLIXFQIIYCECHLK
Ga0272420_100014656	F079402	N/A	MRNKFKMNKNHFSIEEMKIAYVKSRVSETMIKHIALRMKDIIMNSFLEAEKILSIINKMYNVLQAYQDXTRLKL