Scaffold Ga0272420_1000139

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000139
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107780
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (35.54%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021896	Metagenome	216	Y
F037509	Metagenome	167	Y
F044226	Metagenome	154	Y
F059497	Metagenome	133	Y
F070712	Metagenome	122	Y
F102180	Metagenome	101	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100013917	F102180	N/A	LKRSTLIITHHEKLKELIARAKHLADVMIENQEYHEKIYKVYNDSQTFLKTVKVMISTKDQTRLQRVQIAHESIQS
Ga0272420_100013929	F102181	N/A	MIIVHVHALYQTLLSCIQLIFVFLILKYVEKLLKFRSNEDNDKVYKEMNNKRRLIIQDLCNNLNYHHKRLRIQFYIN
Ga0272420_100013931	F001951	N/A	MTMMKFKFIDSSKDEKERNKNIVETTVIKMMIFELKKLLVNAEMFLTLMNEMIMKMK
Ga0272420_100013934	F021896	N/A	MKNNLESEDFLKSIECNLTFLKSDKKYIFSDETSERDSYSTIVINEFFIKVREI
Ga0272420_100013940	F001951	N/A	MKLKFIDLSRNEKEKDEDTVETTVTKMMIFEFKELLVNAEMFLTLMNEMIMKMK
Ga0272420_100013941	F037509	N/A	MILISILIQIHSTDNETSIKKFVYLMINDIERQNNIKRSIESTRTYNHVIARESIAQSVVSVQID
Ga0272420_100013942	F070712	GAG	MSDIKEKKFLNKVRKQVIFAEKRDSLNLYKKIELTTFIDHSKSCDMILTSVKNIDLQAEICFICHKSDHTSKECSDRTSRVNALEDDEFDLSTLNSESDSDSKN
Ga0272420_100013943	F059497	GAG	MFVENIDREIVYNTQCKLDVINVFSVDETIQNLENVKVKLSLKYQNFLDIFDRAQADKLSSHRSYDHKIELTSDATSSYC
Ga0272420_100013947	F044226	N/A	MKFSENFNIFSVISMTSFYFNKSFHSRMSFDSDATDYETIRERLEARKADDIVI
Ga0272420_100013948	F102181	N/A	MKEITIIIHVHALYQTLLSCIQSIFVLLILKYVKKFLESKSNEDNDKICRRMNDEKRLIVQDLCNNLSYHHKRLRIQLYIN