Scaffold Ga0272420_1000138

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000138
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108009
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (56.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F021216	Metagenome	219	Y
F025887	Metagenome	199	Y
F058565	Metagenome	134	Y
F065269	Metagenome	127	Y
F098339	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_1000138103	F000597	N/A	MKDVLISSMMSISNDSFASESLAIECVLSSNKISYSLKSLIDIEAADYSFINEVIAQIVCNQLQIKSLTLIKVKSIREFNDHYAKKLITYVIYSNLTV
Ga0272420_1000138104	F021216	N/A	MSQIKSEMKSNAMRKEHHELKKALRNRECSDDDHLNDTLNEHTESISSCDVIEESDERER
Ga0272420_1000138106	F017941	N/A	MKIADLKKNISASIYKQILEINEINENCMLLREAIARDETQYEDIKLKNC
Ga0272420_1000138107	F013598	N/A	MNFIIDLFDSSEYNAILTIICRLSKERHYISCITDDEDITVEKTAEMLIQ
Ga0272420_1000138108	F098339	N/A	MIEFVNNNILFLIIFLILFFMNKNFYSCMSFDSDIIEYESTCERLQTNQVKNIFEQMNKTLIFARKALIKTREQMMNQVNKHRKKINYKIKSRMFLNE
Ga0272420_1000138133	F065269	N/A	MTRSTELELESESVSIARYELQNARRESLLSQNQTASEEEDMNASSNTEEENMNALLFDHEMIKISISTELNA
Ga0272420_1000138135	F025887	GAG	MLISCFINMLDDSFDFKSFIVNVILNSLKKIFRFLALIDIEVTDMTFIDDSLISELCKRFDIQ
Ga0272420_100013897	F058565	N/A	MTMNCMNHSNADSKTIASDVDSLQENRDARLKHSRNDKENVANIIDLLIKISTLEKEKSKDHS