Scaffold Ga0272420_1000113

Overview

Basic Information

• Taxon OID: 3300030517
• Scaffold ID: Ga0272420_1000113
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116271
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (55.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -76.9
  • Long. (^o): 160.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048019	Metagenome	148	Y
F061401	Metagenome	131	Y
F096306	Metagenome	104	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272420_100011344	F061401	N/A	LNNDQRVIREIKNKIKRVNDIFKTIFHKVTVVTQSIDHLKSDQLKSRDAILTSVKEADILVKSCFICHKSGHSSKECLDQSTRINAVNNEYDRFDFNSNFDSKN
Ga0272420_100011367	F096306	N/A	MFAMYNNYAVDSLIIDDDSNEEKSCRDNSELQALMILFDIATLIATNVKIIFVESNDK
Ga0272420_100011370	F048019	N/A	VNEHAFELFFAQAFMKALQDESTVYALVIINIIKELIIEHQVKAMNNVTSRITNALKTQTLFIELKEYEDVFSTESVDKLLLHEDYDHAIEITAKSSYESLYNLSNTELMTLRQYLNDVLAKE
Ga0272420_100011372	F102179	N/A	MINEIKKMSVYSVSKNMSTCSAMHVRSMLLRIMTLAMRETHLDEVHFLRDKISQFKSTTLRSINVETLTHKDCNVAEKQLNSVAETVDCKQLISRAIVRVLTIHETTYNFSSKFIVELIKILQ